8OZ5: Cryo-EM structure of Phthaloyl-CoA decarboxylase (Pcd) bound with substrate analog/inhibitor, 2-CN-benzoyl-CoA

PDB ID: 8OZ5Download
MMDB ID: 247849
PDB Deposition Date: 2023/5/8
Updated in MMDB: 2024/06
Experimental Method:
electron microscopy
Resolution: 2.04  Å
Source Organism:
Similar Structures:
Biological Unit for 8OZ5: hexameric; determined by author and by software (PISA)
Molecular Components in 8OZ5
Label Count Molecule
Proteins (6 molecules)
6
Phthaloyl-coa Decarboxylase (Pcd)
Molecule annotation
Chemicals and Non-standard biopolymers (36 molecules)
1
6
hydroxylated prenyl-FMNhydroxylated prenyl-FMN
2
6
2-CN-benzoyl coenzyme A2-CN-benzoyl coenzyme A
3
12
FE (III) IONFE (III) ION
4
6
POTASSIUM IONPOTASSIUM ION
5
6
CALCIUM IONCALCIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303