8OPM: Human Coronavirus HKU1 spike glycoprotein in complex with an alpha2,8-linked 9-O-acetylated disialoside (closed state)

PDB ID: 8OPMDownload
MMDB ID: 233652
PDB Deposition Date: 2023/4/7
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 3.7  Å
Source Organism:
Similar Structures:
Biological Unit for 8OPM: trimeric; determined by author and by software (PISA)
Molecular Components in 8OPM
Label Count Molecule
Proteins (3 molecules)
3
Spike Glycoprotein,general Control Transcription Factor Gcn4
(Gene symbol: GCN4)
Molecule annotation
Chemicals and Non-standard biopolymers (123 molecules)
1
96
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
21
beta-D-mannopyranosebeta-D-mannopyranose
3
3
N-acetyl-alpha-neuraminic acidN-acetyl-alpha-neuraminic acid
4
3
9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303