National Center for
Biotechnology Information

8OO0: Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

PDB ID:

8OO0 Download

MMDB ID:

243024

PDB Deposition Date:

2023/4/4

Updated in MMDB:

2024/02

Experimental Method:

electron microscopy

Resolution:

3.1 Å

Source Organism:

Thermochaetoides thermophila DSM 1495▼

Taxonomy	Molecule
Thermochaetoides thermophila DSM 1495	2, 3, 4
Thermochaetoides thermophila	1, A, B, C, LA, LB, LC, LD, LE, LF, LG, LH, LI, LJ, LK, LL, LM, LN, LO, LP, LQ, LR, LS, LT, LU, LV, LW, LX, LY, LZ, La, Lb, Lc, Ld, Le, Lf, Lg, Lh, Li, Lj, Lk, Ll, Lm, Ln, Lo, Lp, Lq, Lr, Ls, SA, SB, SC, SD, SE, SF, SG, SH, SI, SJ, SK, SL, SM, SN, SO, SP, SQ, SR, SS, ST, SU, SV, SW, SX, SY, SZ, Sa, Sb, Sc, Sd, Se, Sf, D

Similar Structures:

Biological Unit for 8OO0: 85-meric; determined by author

Molecular Components in 8OO0
Label	Count	Molecule
Proteins (81 molecules)
A	1	Putative Guanine Nucleotide-binding Protein
B	1	Hyaluronan/mrna-binding Protein Domain-containing Protein
C	1	Ribosome-associated Molecular Chaperone Ssb1
LA	1	60S Ribosomal Protein L2-like Protein
LB	1	60S Ribosomal Protein L3-like Protein
LC	1	60S Ribosomal Protein L4-like Protein
LD	1	60S Ribosomal Protein L5-like Protein
LE	1	60S Ribosomal Protein L6
LF	1	60S Ribosomal Protein L7-like Protein
LG	1	60S Ribosomal Protein L8
LH	1	60S Ribosomal Protein L9-like Protein
LI	1	60S Ribosomal Protein L10-like Protein
LJ	1	Putative Ribosomal Protein
LK	1	60S Ribosomal Protein L12-like Protein
LL	1	60S Ribosomal Protein L13
LM	1	60S Ribosomal Protein L14-like Protein
LN	1	Ribosomal Protein L15
LO	1	60S Ribosomal Protein L16-like Protein
LP	1	60S Ribosomal Protein L17-like Protein
LQ	1	Ribosomal Protein L18-like Protein
LR	1	Ribosomal Protein L19
LS	1	60S Ribosomal Protein L20
LT	1	60S Ribosomal Protein L21-like Protein
LU	1	60S Ribosomal Protein L22-like Protein
LV	1	60S Ribosomal Protein L23-like Protein
LW	1	60S Ribosomal Protein L24
LX	1	60S Ribosomal Protein L25-like Protein
LY	1	60S Ribosomal Protein L26-like Protein
LZ	1	60S Ribosomal Protein L27
La	1	Ribosomal Protein L18e/l15p Domain-containing Protein
Lb	1	60S Ribosomal Protein L29
Lc	1	60S Ribosomal Protein L30-like Protein
Ld	1	Putative 60S Ribosomal Protein
Le	1	60S Ribosomal Protein L32-like Protein
Lf	1	60S Ribosomal Protein L33-like Protein
Lg	1	Ribosomal Protein L34-like Protein
Lh	1	Dolichyl-diphosphooligosaccharide--protein Glycotransferase
Li	1	60S Ribosomal Protein L36
Lj	1	Ribosomal Protein L37
Lk	1	60S Ribosomal Protein L38
Ll	1	60S Ribosomal Protein L39
Lm	1	Ubiquitin-like Domain-containing Protein
Ln Lr	2	60S Ribosomal Protein L41-a
Lo	1	60S Ribosomal Protein L44-like Protein
Lp	1	60S Ribosomal Protein L43-like Protein
Lq	1	Putative 60S Ribosomal Protein
Ls	1	60S Acidic Ribosomal Protein P0
SA	1	40S Ribosomal Protein S0
SB	1	40S Ribosomal Protein S1
SC	1	40S Ribosomal Protein S2-like Protein
SD	1	40S Ribosomal Protein S3-like Protein
SE	1	40S Ribosomal Protein S4
SF	1	40S Ribosomal Protein S5-like Protein
SG	1	40S Ribosomal Protein S6
SH	1	40S Ribosomal Protein S7
SI	1	40S Ribosomal Protein S8
SJ	1	40S Ribosomal Protein S9-like Protein
SK	1	40S Ribosomal Protein S10-like Protein
SL	1	40S Ribosomal Protein S11-like Protein
SM	1	40S Ribosomal Protein S12
SN	1	40S Ribosomal Protein S13-like Protein
SO	1	40S Ribosomal Protein S14-like Protein
SP	1	40S Ribosomal Protein S15-like Protein
SQ	1	40S Ribosomal Protein S16-like Protein
SR	1	40S Ribosomal Protein S17-like Protein
SS	1	Putative Ribosomal Protein
ST	1	40S Ribosomal Protein S19-like Protein
SU	1	40S Ribosomal Protein S20-like Protein
SV	1	40S Ribosomal Protein S21-like Protein
SW	1	40S Ribosomal Protein S22-like Protein
SX	1	40S Ribosomal Protein S23-like Protein
SY	1	40S Ribosomal Protein S24
SZ	1	40S Ribosomal Protein S25
Sa	1	40S Ribosomal Protein S26
Sb	1	Ribosomal Protein S27-like Protein
Sc	1	40S Ribosomal Protein S28-like Protein
Sd	1	40S Ribosomal Protein S29
Se	1	40S Ribosomal Protein S30
Sf	1	40S Ribosomal Protein S27a-like Protein
D	1	Methionine Aminopeptidase 2
Nucleotides(4 molecules)
1	1	28S rRNA
2	1	18S rRNA
3	1	5S rRNA
4	1	5.8s rRNA
Chemicals and Non-standard biopolymers (8 molecules)
1	8	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303