8OLY: Structure of Oceanobacillus iheyensis group II intron post first step of splicing in the presence of K+, Mg2+ and intronistat B

PDB ID: 8OLYDownload
MMDB ID: 248457
PDB Deposition Date: 2023/3/30
Updated in MMDB: 2024/07
Experimental Method:
x-ray diffraction
Resolution: 3.11  Å
Source Organism:
Biological Unit for 8OLY: dimeric; determined by author
Molecular Components in 8OLY
Label Count Molecule
Nucleotides(2 molecules)
1
Group IIC Intron
Molecule annotation
1
5'-exon
Molecule annotation
Chemicals and Non-standard biopolymers (56 molecules)
1
30
MAGNESIUM IONMAGNESIUM ION
2
19
POTASSIUM IONPOTASSIUM ION
3
5
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4
2
SPERMINESPERMINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303