National Center for
Biotechnology Information

8OIQ: 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA

PDB ID:

8OIQ Download

MMDB ID:

249070

PDB Deposition Date:

2023/3/23

Updated in MMDB:

2024/07

Experimental Method:

electron microscopy

Resolution:

3.5 Å

Source Organism:

Sus scrofa▼

Taxonomy	Molecule
Sus scrofa	B1, B2, B3, B4, B5, B6, B7, B8, B9, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO, BP, BQ, BR, BS, BT, BU, BV, BW, BX, BY, BZ, Ba, Bb, Bc, Bd, Be, Bf, Bg, Bh, Bi, Bj, Bl, Bm, Bn, Bo, Bp, Bq, Br, Bs, Bt, Bu, Bv, Bw, Bx, By, Bz
Homo sapiens	AG, Aa

Similar Structures:

Biological Unit for 8OIQ: 62-meric; determined by author

Molecular Components in 8OIQ
Label	Count	Molecule
Proteins (58 molecules)
B1 B2 B3 B4 B5 B6	6	Mitochondrial Ribosomal Protein L12
BA	1	Large Ribosomal Subunit Protein Ul22m
BB	1	39S Ribosomal Protein L23, Mitochondrial
BC	1	Ul24m
BD	1	39S Ribosomal Protein L27, Mitochondrial
BE	1	Mitochondrial Ribosomal Protein L28
BF	1	Mitochondrial Ribosomal Protein L47
BG	1	Large Ribosomal Subunit Protein Ul30m
BH	1	Mitochondrial Ribosomal Protein L32
BI	1	Large Ribosomal Subunit Protein Bl33m
BJ	1	Large Ribosomal Subunit Protein Bl34m
BK	1	39S Ribosomal Protein L35, Mitochondrial
BL	1	Mitochondrial Ribosomal Protein L2
BM	1	Ict1
BN	1	Mitochondrial Ribosomal Protein L4
BO	1	Mitochondrial Ribosomal Protein L9
BP	1	Mitochondrial Ribosomal Protein L10
BQ	1	Mitochondrial Ribosomal Protein L11
BR	1	39S Ribosomal Protein L13, Mitochondrial
BS	1	Mitochondrial Ribosomal Protein L14
BT	1	39S Ribosomal Protein L15, Mitochondrial
BU	1	Ul16m
BV	1	Bl17m
BW	1	Mitochondrial Ribosomal Protein L18
BX	1	39S Ribosomal Protein L19, Mitochondrial
BY	1	Mitochondrial Ribosomal Protein L20
BZ	1	Mitochondrial Ribosomal Protein L21
Ba	1	39S Ribosomal Protein L52, Mitochondrial
Bb	1	Mitochondrial Ribosomal Protein L53
Bc	1	Ml54
Bd	1	Mitochondrial Ribosomal Protein L55
Be	1	Mitochondrial Ribosomal Protein L57
Bf	1	Ml62 (Ict1)
Bg	1	Ml64
Bh	1	Mitochondrial Ribosomal Protein S18a
Bi	1	39S Ribosomal Protein S30, Mitochondrial
Bj	1	39S Ribosomal Protein L1, Mitochondrial
Bl	1	Ribosomal Protein
Bm	1	Mitochondrial Ribosomal Protein L37
Bn	1	Mitochondrial Ribosomal Protein L38
Bo	1	Mitochondrial Ribosomal Protein L39
Bp	1	Mitochondrial Ribosomal Protein L40
Bq	1	39S Ribosomal Protein L41, Mitochondrial
Br	1	Ml42
Bs	1	Large Ribosomal Subunit Protein Ml43
Bt	1	Ml44
Bu	1	Mitochondrial Ribosomal Protein L45
Bv	1	Mitochondrial Ribosomal Protein L46
Bw	1	39S Ribosomal Protein L48, Mitochondrial
Bx	1	39S Ribosomal Protein L49, Mitochondrial
By	1	Mitochondrial Ribosomal Protein L50
Bz	1	Large Ribosomal Subunit Protein Ml51
Aa	1	Peptide Chain Release Factor 1, Mitochondrial
Nucleotides(4 molecules)
B7	1	E-site tRNA
B8	1	16S rRNA
B9	1	CP Phe-trna
AG	1	P-site Met-trna(fmet)
Chemicals and Non-standard biopolymers (240 molecules)
1	205	MAGNESIUM ION
2	30	POTASSIUM ION
3	1	PHENYLALANINE
4	2	ZINC ION
5	1	FE2/S2 (INORGANIC) CLUSTER
6	1	N-FORMYLMETHIONINE

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303