8KHD: The interface structure of Omicron RBD binding to 5817 Fab

PDB ID: 8KHDDownload
MMDB ID: 245428
PDB Deposition Date: 2023/8/21
Updated in MMDB: 2025/07
Experimental Method:
electron microscopy
Resolution: 3.5  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8KHD: trimeric; determined by author and by software
Molecular Components in 8KHD
Label Count Molecule
Proteins (3 molecules)
1
Heavy Chain of 5817
Molecule annotation
1
Light Chain of 5817
Molecule annotation
1
Spike Protein S1
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303