8K9R: Cryo EM structure of the products-bound PGAP1(Bst1)-H443N from Chaetomium thermophilum

PDB ID: 8K9RDownload
MMDB ID: 240241
PDB Deposition Date: 2023/8/1
Updated in MMDB: 2023/12
Experimental Method:
electron microscopy
Resolution: 2.68  Å
Source Organism:
Similar Structures:
Biological Unit for 8K9R: dimeric; determined by author
Molecular Components in 8K9R
Label Count Molecule
Proteins (2 molecules)
1
GPI Inositol-deacylase,mcherry Protein
(Gene symbol: CTHT_0034210)
Molecule annotation
1
Green Fluorescent Protein,complement Decay-accelerating Factor
(Gene symbol: CD55)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
2
alpha-D-mannopyranosealpha-D-mannopyranose
2
1
2-azanylethyl [(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate2-azanylethyl [(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl] hydrogen phosphate
3
1
2-amino-2-deoxy-alpha-D-glucopyranose2-amino-2-deoxy-alpha-D-glucopyranose
4
1
[(2~{R})-1-octadecoxy-3-[oxidanyl-[(2~{R},3~{R},5~{S},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] octadecanoate[(2~{R})-1-octadecoxy-3-[oxidanyl-[(2~{R},3~{R},5~{S},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] octadecanoate
5
1
PALMITIC ACIDPALMITIC ACID
6
1
CHOLESTEROLCHOLESTEROL
7
1
2-azanylethyl [(2R,3S,4S,5S,6S)-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methyl hydrogen phosphate2-azanylethyl [(2R,3S,4S,5S,6S)-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methyl hydrogen phosphate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303