8K2K: Crystal structure of Group 3 Oligosaccharide/Monosaccharide-releasing beta-N-acetylgalactosaminidase NgaDssm in complex with GalNAc-thiazoline

PDB ID: 8K2KDownload
MMDB ID: 245779
PDB Deposition Date: 2023/7/12
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 1.75  Å
Source Organism:
Similar Structures:
Biological Unit for 8K2K: monomeric; determined by author and by software
Molecular Components in 8K2K
Label Count Molecule
Protein (1 molecule)
1
Oligosaccharide/monosaccharide-releasing Beta-n-acetylgalactosaminidase
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
(3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol(3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol
2
1
GLYCEROLGLYCEROL
3
2
SULFATE IONSULFATE ION
4
1
CHLORIDE IONCHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303