8JZE: PSI-AcpPCI supercomplex from Symbiodinium

PDB ID: 8JZEDownload
MMDB ID: 243312
PDB Deposition Date: 2023/7/5
Updated in MMDB: 2025/08
Experimental Method:
electron microscopy
Resolution: 2.99  Å
Source Organism:
Similar Structures:
Biological Unit for 8JZE: 27-meric; determined by author
Molecular Components in 8JZE
Label Count Molecule
Proteins (27 molecules)
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-7, Acppci-7
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-6, Acppci-6
Molecule annotation
1
Photosystem I UNK
Molecule annotation
1
Photosystem I UNK
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-8, Acppci-8
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-10, Acppci-10
Molecule annotation
1
Photosystem I Psac
Molecule annotation
1
Photosystem I Psad
Molecule annotation
1
Photosystem I Psae
Molecule annotation
1
Photosystem I Psaf
Molecule annotation
1
Photosystem I Psar
Molecule annotation
1
Photosystem I Psai
Molecule annotation
1
Photosystem I Psaj
Molecule annotation
1
Photosystem I Psal
Molecule annotation
1
Photosystem I Psam
Molecule annotation
1
Photosystem I Psaa
Molecule annotation
1
Photosystem I Psab
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-11, Acppci-11
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-9, Acppci-9
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-2, Acppci-2
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-12, Acppci-12
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-3, Acppci-3
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-5, Acppci-5
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-4, Acppci-4
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-13, Acppci-13
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-15, Acppci-15
Molecule annotation
1
Chlorophyll A-chlorophyll C-peridinin-protein-complex I-14, Acppci-14
Molecule annotation
Chemicals and Non-standard biopolymers (342 molecules)
1
43
(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
2
9
[(1~{S},5~{R})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate[(1~{S},5~{R})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate
3
201
CHLOROPHYLL ACHLOROPHYLL A
4
26
Chlorophyll c1Chlorophyll c1
5
7
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
6
9
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
7
28
PERIDININPERIDININ
8
1
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
9
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
10
12
BETA-CAROTENEBETA-CAROTENE
11
2
PHYLLOQUINONEPHYLLOQUINONE
12
1
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303