8JYO: Structure of SARS-CoV-2 XBB.1.5 spike glycoprotein in complex with ACE2 (2-up state)

PDB ID: 8JYODownload
MMDB ID: 240873
PDB Deposition Date: 2023/7/3
Updated in MMDB: 2025/01
Experimental Method:
electron microscopy
Resolution: 3.2  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8JYO: pentameric; determined by author
Molecular Components in 8JYO
Label Count Molecule
Proteins (5 molecules)
3
Spike Glycoprotein
Molecule annotation
2
Processed Angiotensin-converting Enzyme 2
Molecule annotation
Chemicals and Non-standard biopolymers (76 molecules)
1
68
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
4
beta-D-mannopyranosebeta-D-mannopyranose
3
4
alpha-D-mannopyranosealpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303