8JVA: Cryo-EM structure of the N-terminal domain of Omicron BA.1 in complex with nanobody N235 and S2L20 Fab

PDB ID: 8JVADownload
MMDB ID: 247210
PDB Deposition Date: 2023/6/28
Updated in MMDB: 2025/07
Experimental Method:
electron microscopy
Resolution: 2.81  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8JVA: tetrameric; determined by author
Molecular Components in 8JVA
Label Count Molecule
Proteins (4 molecules)
1
Nanobody N235
Molecule annotation
1
S2l20 Light Chain
Molecule annotation
1
S2l20 Heavy Chain
Molecule annotation
1
Spike Protein S2'
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
5
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303