8JPX: Cryo-EM structure of PfAgo-guide DNA-target DNA complex

PDB ID: 8JPXDownload
MMDB ID: 241993
PDB Deposition Date: 2023/6/13
Updated in MMDB: 2025/08
Experimental Method:
electron microscopy
Resolution: 2.9  Å
Source Organism:
Similar Structures:
Biological Unit for 8JPX: octameric; determined by author
Molecular Components in 8JPX
Label Count Molecule
Proteins (2 molecules)
2
Protein Argonaute
(Gene symbol: PF_RS02750)
Molecule annotation
Nucleotides(6 molecules)
2
Guide DNA
Molecule annotation
2
Target DNA
Molecule annotation
2
Excess DNA
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
6
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303