8JNR: Crystal structure of human ALKBH3 bound to 3mC containing ssDNA through distal crosslink

PDB ID: 8JNRDownload
MMDB ID: 241725
PDB Deposition Date: 2023/6/6
Updated in MMDB: 2024/02
Experimental Method:
x-ray diffraction
Resolution: 3.66  Å
Source Organism:
Similar Structures:
Biological Unit for 8JNR: 14-meric; determined by author and by software (PISA)
Molecular Components in 8JNR
Label Count Molecule
Proteins (12 molecules)
4
Alpha-ketoglutarate-dependent Dioxygenase Alkb Homolog 3
(Gene symbol: ALKBH3)
Molecule annotation
4
Synthetic Antibody Heavy Chain
Molecule annotation
4
Synthetic Antibody Light Chain
Molecule annotation
Nucleotides(2 molecules)
2
DNA
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
2
N-OXALYLGLYCINEN-OXALYLGLYCINE
2
4
MANGANESE (II) IONMANGANESE (II) ION
3
1
[(2R,3S,5R)-5-(4-azanyl-3-methyl-2-oxo-pyrimidin-3-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate[(2R,3S,5R)-5-(4-azanyl-3-methyl-2-oxo-pyrimidin-3-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303