8JKK: Crystal Structure of the dioxygenase CcTet from Coprinopsis cinerea bound to 12bp 5-methylcytosine (5mC) containing duplex DNA

PDB ID: 8JKKDownload
MMDB ID: 243650
PDB Deposition Date: 2023/6/1
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 2.3  Å
Source Organism:
Coprinopsis cinerea okayama7#130▼
Similar Structures:
Biological Unit for 8JKK: trimeric; determined by author
Molecular Components in 8JKK
Label Count Molecule
Protein (1 molecule)
1
2ogfedo Jbp1/tet Oxygenase Domain-containing Protein
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(p*cp*gp*ap*tp*cp*(5cm)p*gp*cp*tp*ap*cp*g)-3')
Molecule annotation
1
DNA (5'-d(p*cp*gp*tp*ap*gp*cp*tp*gp*ap*tp*cp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
MANGANESE (II) IONMANGANESE (II) ION
2
1
N-OXALYLGLYCINEN-OXALYLGLYCINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303