8JJR: Cryo-EM structure of Symbiodinium photosystem I

PDB ID: 8JJRDownload
MMDB ID: 246933
PDB Deposition Date: 2023/5/31
Updated in MMDB: 2025/07
Experimental Method:
electron microscopy
Resolution: 2.8  Å
Source Organism:
Similar Structures:
Biological Unit for 8JJR: 26-meric; determined by author
Molecular Components in 8JJR
Label Count Molecule
Proteins (26 molecules)
1
Pcpi-7
Molecule annotation
1
Pcpi-1
Molecule annotation
1
Pcp-11
Molecule annotation
1
Pcpi-6
Molecule annotation
1
Pcpi-5
Molecule annotation
1
Pcpi-8
Molecule annotation
1
Pcpi-4
Molecule annotation
1
Pcpi-10
Molecule annotation
1
Pcpi-3
Molecule annotation
1
Pcpi-9
Molecule annotation
1
Pcpi-13
Molecule annotation
1
Pcpi-12
Molecule annotation
1
Pcpi-2
Molecule annotation
1
Psaa
Molecule annotation
1
Psab
Molecule annotation
1
Psac
Molecule annotation
1
Psad
Molecule annotation
1
Psae
Molecule annotation
1
Psaf
Molecule annotation
1
Psai
Molecule annotation
1
Psaj
Molecule annotation
1
Psal
Molecule annotation
1
Psam
Molecule annotation
1
Psar
Molecule annotation
1
Psat
Molecule annotation
1
Psau
Molecule annotation
Chemicals and Non-standard biopolymers (323 molecules)
1
196
CHLOROPHYLL ACHLOROPHYLL A
2
20
Chlorophyll c2Chlorophyll c2
3
16
[(1~{S},5~{R})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate[(1~{S},5~{R})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate
4
41
(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
5
3
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
6
10
PERIDININPERIDININ
7
7
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
8
7
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
9
4
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
10
1
DODECYL-ALPHA-D-MALTOSIDEDODECYL-ALPHA-D-MALTOSIDE
11
2
PHYLLOQUINONEPHYLLOQUINONE
12
13
BETA-CAROTENEBETA-CAROTENE
13
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303