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8JH2: RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome

PDB ID:

MMDB ID:

239168

PDB Deposition Date:

2023/5/22

Updated in MMDB:

2023/12

Experimental Method:

electron microscopy

Resolution:

5.7 Å

Source Organism:

Komagataella phaffii▼

Similar Structures:

Biological Unit for 8JH2: 28-meric; determined by author

Molecular Components in 8JH2
Label	Count	Molecule
Proteins (23 molecules)
A	1	DNA-directed RNA Polymerase Subunit
B	1	DNA-directed RNA Polymerase Subunit Beta
C	1	RNA Polymerase II Third Largest Subunit B44, Part of Central Core
D	1	RNA Polymerase II Subunit B32
E	1	RNA Polymerase Subunit Abc27
F	1	RNA Polymerase Subunit Abc23, Common to RNA Polymerases I, II, and III
G	1	RNA Polymerase II Subunit
H	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
I	1	DNA-directed RNA Polymerase Subunit
J	1	RNA Polymerase Subunit Abc10-beta, Common to RNA Polymerases I, II, and III
K	1	RNA Polymerase II Subunit B12.5
L	1	RNA Polymerase Subunit Abc10-alpha
M	1	Transcription Elongation Factor 1 Homolog
V	1	Transcription Elongation Factor Spt4
W	1	Transcription Elongation Factor Spt5
a e	2	Histone H3.3
b f	2	Histone H4
c g	2	Histone H2A Type 1-b/e
d h	2	Histone H2B Type 1-J
Nucleotides(5 molecules)
0	1	DNA (40-mer)
1	1	DNA (40-mer)
N	1	DNA (218-mer)
P	1	RNA (5'-r(pcpcpupgpgpupgpupcpupupgpgpgpupg)-3')
T	1	DNA (218-mer)
Chemicals and Non-standard biopolymers (11 molecules)
1	10	ZINC ION
2	1	MAGNESIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB