8J9X: Cryo-EM structure of the African swine fever virus topoisomerase 2 complexed with Cut02aDNA and m-AMSA (EDI-3)

PDB ID: 8J9XDownload
MMDB ID: 242312
PDB Deposition Date: 2023/5/5
Updated in MMDB: 2025/07
Experimental Method:
electron microscopy
Resolution: 3  Å
Source Organism:
African swine fever virus▼
Similar Structures:
Biological Unit for 8J9X: hexameric; determined by author
Molecular Components in 8J9X
Label Count Molecule
Proteins (2 molecules)
2
DNA Topoisomerase 2
Molecule annotation
Nucleotides(4 molecules)
2
DNA (5'-d(*gp*ap*gp*gp*tp*ap*tp*gp*tp*ap*gp*gp*c)-3')
Molecule annotation
2
DNA (5'-d(*gp*gp*cp*cp*gp*cp*cp*tp*ap*cp*ap*tp*ap*cp*cp*tp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
2
N-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamideN-[4-(acridin-9-ylamino)-3-methoxyphenyl]methanesulfonamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303