8J9I: Cryo-EM structure of Euglena gracilis complex I, turnover state

PDB ID: 8J9IDownload
MMDB ID: 243285
PDB Deposition Date: 2023/5/3
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 2.87  Å
Source Organism:
Similar Structures:
Biological Unit for 8J9I: 61-meric; determined by author
Molecular Components in 8J9I
Label Count Molecule
Proteins (61 molecules)
1
Ndufs1a
Molecule annotation
1
Ndufs1b
Molecule annotation
1
Nd2b
Molecule annotation
1
Nd4l
Molecule annotation
1
Ndufa1
Molecule annotation
1
Ndufa2
Molecule annotation
1
Ndufa3
Molecule annotation
1
Ndufa5
Molecule annotation
1
Ndufa6
Molecule annotation
1
Ndufa7
Molecule annotation
1
Ndufa8
Molecule annotation
1
Ndufa9
Molecule annotation
1
Ndufab1-alpha
Molecule annotation
1
Ndufab1-beta
Molecule annotation
1
Ndufa12
Molecule annotation
1
Ndufa13
Molecule annotation
1
Ndufa11
Molecule annotation
1
Ndufb2
Molecule annotation
1
Ndufb3
Molecule annotation
1
Ndufb4
Molecule annotation
1
Ndufb5
Molecule annotation
1
Ndufb6
Molecule annotation
1
Ndufb7
Molecule annotation
1
Ndufb8
Molecule annotation
1
Ndufb9
Molecule annotation
1
Ndufb10
Molecule annotation
1
Ndufb11
Molecule annotation
1
Ndufc2
Molecule annotation
1
Ndueg1
Molecule annotation
1
Ndueg2
Molecule annotation
1
Ndueg3
Molecule annotation
1
Ndueg4
Molecule annotation
1
Ndueg5
Molecule annotation
1
Ndueg6
Molecule annotation
1
Ndueg8
Molecule annotation
1
Ndueg10
Molecule annotation
1
Ndueg11
Molecule annotation
1
Ndueg12
Molecule annotation
1
Ndueg13
Molecule annotation
1
Ndufx
Molecule annotation
1
Nduca1
Molecule annotation
1
Nduca2
Molecule annotation
1
Nduca3
Molecule annotation
1
ND1
Molecule annotation
1
Nd2a
Molecule annotation
2
ND3
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 4
Molecule annotation
1
ND5
Molecule annotation
1
Ndufs2
Molecule annotation
1
Ndufs3
Molecule annotation
1
Ndufs4
Molecule annotation
1
Ndufs5
Molecule annotation
1
Ndufs6
Molecule annotation
1
Ndufs7
Molecule annotation
1
Ndufs8
Molecule annotation
2
Unk-unk-unk-unk-unk-unk-unk-unk-unk-unk-unk-unk
Molecule annotation
1
Ndufv1
Molecule annotation
1
Ndufv2
Molecule annotation
1
Ndueg7
Molecule annotation
Chemicals and Non-standard biopolymers (65 molecules)
1
2
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
2
6
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
3
1
POTASSIUM IONPOTASSIUM ION
4
26
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
5
18
CARDIOLIPINCARDIOLIPIN
6
1
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATENADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
7
2
S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioateS-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate
8
4
1,2-Distearoyl-sn-glycerophosphoethanolamine1,2-Distearoyl-sn-glycerophosphoethanolamine
9
1
UBIQUINONE-10UBIQUINONE-10
10
2
ZINC IONZINC ION
11
1
FLAVIN MONONUCLEOTIDEFLAVIN MONONUCLEOTIDE
12
1
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303