8J7B: Coordinates of Cryo-EM structure of the Arabidopsis thaliana PSI in state 2 (PSI-ST2)

PDB ID: 8J7BDownload
MMDB ID: 238492
PDB Deposition Date: 2023/4/27
Updated in MMDB: 2023/11
Experimental Method:
electron microscopy
Resolution: 3.22  Å
Source Organism:
Similar Structures:
Biological Unit for 8J7B: hexadecameric; determined by author
Molecular Components in 8J7B
Label Count Molecule
Proteins (16 molecules)
1
Chlorophyll A-B Binding Protein 6, Chloroplastic
(Gene symbol: LHCA1)
Molecule annotation
1
Photosystem I Chlorophyll A/b-binding Protein 2, Chloroplastic
(Gene symbol: LHCA2)
Molecule annotation
1
Photosystem I Chlorophyll A/b-binding Protein 3-1, Chloroplastic
(Gene symbol: LHCA3)
Molecule annotation
1
Chlorophyll A-B Binding Protein 4, Chloroplastic
(Gene symbol: LHCA4)
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A1
(Gene symbol: psaA)
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A2
(Gene symbol: psaB)
Molecule annotation
1
Photosystem I Iron-sulfur Center
(Gene symbol: psaC)
Molecule annotation
1
Photosystem I Reaction Center Subunit Ii-2, Chloroplastic
(Gene symbol: PSAD-2)
Molecule annotation
1
Photosystem I Reaction Center Subunit IV A, Chloroplastic
(Gene symbol: PSAE-1)
Molecule annotation
1
Photosystem I Reaction Center Subunit Iii, Chloroplastic
(Gene symbol: PSAF)
Molecule annotation
1
Photosystem I Reaction Center Subunit V, Chloroplastic
(Gene symbol: PSAG)
Molecule annotation
1
Photosystem I Reaction Center Subunit Vi-2, Chloroplastic
(Gene symbol: PSAH2)
Molecule annotation
1
Photosystem I Reaction Center Subunit Viii
(Gene symbol: psaI)
Molecule annotation
1
Photosystem I Reaction Center Subunit IX
(Gene symbol: psaJ)
Molecule annotation
1
Photosystem I Reaction Center Subunit Psak, Chloroplastic
(Gene symbol: PSAK)
Molecule annotation
1
Photosystem I Reaction Center Subunit XI, Chloroplastic
(Gene symbol: PSAL)
Molecule annotation
Chemicals and Non-standard biopolymers (201 molecules)
1
12
CHLOROPHYLL BCHLOROPHYLL B
2
141
CHLOROPHYLL ACHLOROPHYLL A
3
3
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
4
6
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
5
5
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
6
25
BETA-CAROTENEBETA-CAROTENE
7
2
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
8
1
CHLOROPHYLL A ISOMERCHLOROPHYLL A ISOMER
9
2
PHYLLOQUINONEPHYLLOQUINONE
10
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
11
1
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303