8J4U: Structure of HerA-Sir2 complex from Escherichia coli Nezha system

PDB ID: 8J4UDownload
MMDB ID: 240858
PDB Deposition Date: 2023/4/20
Updated in MMDB: 2025/06
Experimental Method:
electron microscopy
Resolution: 2.97  Å
Source Organism:
Similar Structures:
Biological Unit for 8J4U: octadecameric; determined by author
Molecular Components in 8J4U
Label Count Molecule
Proteins (18 molecules)
12
Sir2-like Domain-containing Protein
Molecule annotation
6
Nucleoside Triphosphate Hydrolase
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
12
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
2
5
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTERPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
3
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303