8J0D: FCP heterodimer, Lhca2, and Lhcf5 together as the M1 side binds to the PSII core in the diatom Thalassiosira pseudonana

PDB ID: 8J0DDownload
MMDB ID: 237168
PDB Deposition Date: 2023/4/10
Updated in MMDB: 2023/11
Experimental Method:
electron microscopy
Resolution: 3.19  Å
Source Organism:
Similar Structures:
Biological Unit for 8J0D: tetrameric; determined by author
Molecular Components in 8J0D
Label Count Molecule
Proteins (4 molecules)
1
Fucoxanthin CHL A/C Protein, Lhca Clade
Molecule annotation
1
Fucoxanthin-chlorophyll A-C Binding Protein, Plastid
Molecule annotation
1
Fucoxanthin Chlorophyll A/C Protein 6
Molecule annotation
1
Fucoxanthin Chlorophyll A/C Protein 5
Molecule annotation
Chemicals and Non-standard biopolymers (74 molecules)
1
39
CHLOROPHYLL ACHLOROPHYLL A
2
3
Chlorophyll c1Chlorophyll c1
3
17
(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate
4
2
(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
5
3
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
6
4
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
7
1
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
8
3
Chlorophyll c2Chlorophyll c2
9
2
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303