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8J07: 96nm repeat of human respiratory doublet microtubule and associated axonemal complexes

PDB ID:	8J07 Download
MMDB ID:	233342
PDB Deposition Date:	2023/4/9
Updated in MMDB:	2025/09
Experimental Method:	electron microscopy
Resolution:	4.1 Å
Source Organism:	Homo sapiens
Similar Structures:

Biological Unit for 8J07: 974-meric; determined by author

Molecular Components in 8J07
Label	Count	Molecule
Proteins (974 molecules)
0 4	2	Dynein Regulatory Complex Subunit 4
1	1	Dynein Regulatory Complex Protein 1
10	1	Dynein Regulatory Complex Protein 10
11	1	Dynein Regulatory Complex Protein 11
12 13 14 8	4	Dynein Regulatory Complex Protein 8
1A 1B 1C	3	Ef-hand Domain-containing Family Member B
1D 1E 1F 1G 1H 1I 1J	7	Cilia- and Flagella-associated Protein 45
1L 1M 1N 1O 1P 1Q	6	Cilia- and Flagella-associated Protein 52
1R 1S 1T	3	Cilia- and Flagella-associated Protein 53
1V 1W	2	Cilia- and Flagella-associated Protein 95
1Y 1Z	2	Cilia- and Flagella-associated Protein 107
2	1	Dynein Regulatory Complex Subunit 2
2A 2B 2C 2D 2E 2F 2G	7	Protein Flattop
2I 2J	2	Cilia- and Flagella-associated Protein 141
2L 2M 2N 2O	4	Cilia- and Flagella-associated Protein 161
2Q 2R 2S	3	Cilia- and Flagella- Associated Protein 210
2U 2V 2W 2X 2Y 2Z	6	Cilia- and Flagella-associated Protein 276
3	1	Dynein Regulatory Complex Subunit 3
3A 3B 3C 3D 3E 3F	6	Ef-hand Domain-containing Protein 1
3G 3H 3I 3J 3K 3L 3M	7	Ef-hand Domain-containing Family Member C2
3O 3P 3Q 3R 3S 3T 3U	7	Enkurin
3W 3X 3Y	3	Meiosis-specific Nuclear Structural Protein 1
4A 4B 4C 4D 4E 4F 4G 4H 4I 4J 4K 4L 4M	13	Protein Fam166b
4O 4P 4Q 4R	4	Nucleoside Diphosphate Kinase 7
4S 4T	2	Piercer of Microtubule Wall 1 Protein
4U 4V 4W	3	Piercer of Microtubule Wall 2 Protein
5	1	Dynein Regulatory Complex Subunit 5
5A 5B 5C	3	Rib43a-like With Coiled-coils Protein 2
5D 5E 5F	3	Rib43a-like With Coiled-coils Protein 1
5H 5I 5J	3	Sperm-associated Antigen 8
5L 5M	2	Uncharacterized Protein Cfap68
5O 5P 5Q 5R 5S 5T 5U 5V	8	Cilia- and Flagella-associated Protein 77
5X 5Y	2	Uncharacterized Protein Cfap90
6A 6C 6E 6G 6I 6K 6L 6N 6O 6Q 6R 6T 6V	13	Sperm Acrosome-associated Protein 9
7	1	Dynein Regulatory Complex Subunit 7
7A 7B 7C 7D 7E 7F 7G	7	Protein Fam166c
7I 7J	2	Cilia- and Flagella-associated Protein 144
8A 8B 8C 8D 8E 8F 8G 8H	8	Tektin-1
8J 8K 8L 8M 8N 8O 8P 8Q	8	Tektin-2
9	1	Dynein Regulatory Complex Protein 9
A B C D a b c d	8	Radial Spoke Head 1 Homolog
AZ AC AE AG AI AK AM AO AQ AS AU AW AY BA BC BE BG BI BK BM BO BQ BS BU BW BY CC CE CG CI …	285	Tubulin Alpha-1a Chain
AB AD AF AH AJ AL AN AP AR AT AV AX BB BD BF BH BJ BL BN BP BR BT BV BX CB CD CF CH CJ CL …	289	Tubulin Beta-4b Chain
E F e f	4	Radial Spoke Head Protein 3 Homolog
G H I J g h i j	8	Radial Spoke Head Protein 4 Homolog a
K L k l	4	Sperm Surface Protein Sp17
M N O P m n o p	8	Radial Spoke Head Protein 9 Homolog
Q R q r	4	Ropporin-1-like Protein
S s	2	Probable Inactive Peptidyl-prolyl Cis-trans Isomerase-like 6
T t	2	Radial Spoke Head 14 Homolog
U V u v	4	Dnaj Homolog Subfamily B Member 13
W	1	Calmodulin-1
X Y x y	4	Nucleoside Diphosphate Kinase Homolog 5
XA XB XC XD XE XF XG XH XI XJ XK XL XM	13	Cilia- and Flagella-associated Protein 20
YB YC YD YF YG YH YI YJ YK YL YM	11	Parkin Coregulated Gene Protein
Z z	2	Cytochrome B5 Domain-containing Protein 1
a0	1	Unknown
a1 a2 a3 a4 a5 a6 a7 a8 a9 b0 b1 b2 b3 b4 b5 b6 b7 b8 b9 c0 l1 l2 l3 l4 l5 l6 n1 n2 n3 n4 …	44	Dynll1
c1	1	Morn Repeat-containing Protein 3
c2	1	IQ and Ubiquitin-like Domain-containing Protein
c3 c4 c5 c6	4	Dpy30 Domain-containing Protein 2
d0	1	Cilia- and Flagella-associated Protein 61
d1	1	Cilia- and Flagella-associated Protein 91
d2	1	Cilia- and Flagella-associated Protein 251
d3	1	Tetratricopeptide Repeat Protein 29
d4	1	Zinc Finger Mynd Domain-containing Protein 12
d5 d6 d7 d8 d9 f1	6	Acta2
e0 e1 e2 e3 e4 e5 e6 e7 e8 e9	10	Axonemal Dynein Light Intermediate Polypeptide 1
f2	1	Centrin-2
g1	1	Dynein Axonemal Heavy Chain 12
g2 g4	2	Dynein Axonemal Heavy Chain 7
g3	1	Dynein Axonemal Heavy Chain 3
g5	1	Dynein Axonemal Heavy Chain 6
g6	1	Dynein Axonemal Heavy Chain 1
h1 h2	2	Coiled-coil Domain-containing Protein 39
h3 h4	2	Coiled-coil Domain-containing Protein 40
i1	1	Coiled-coil Domain-containing Protein 96
i2	1	Coiled-coil Domain-containing Protein 113
i3	1	Cilia- and Flagella-associated Protein 299
i4 i5	2	Cilia- and Flagella-associated Protein 57
i6 i8	2	Cilia- and Flagella-associated Protein 43
i7 i9	2	Cilia- and Flagella-associated Protein 44
j1 j2	2	Cilia- and Flagella-associated Protein 58
j3	1	Cilia- and Flagella-associated Protein 73
j4	1	Cilia- and Flagella-associated Protein 100
k1	1	Dynein Axonemal Intermediate Chain 3
k2	1	Dynein Axonemal Intermediate Chain 4
k3	1	Dynein Axonemal Intermediate Chain 7
k4 m4 o4 q4	4	Dynein Light Chain Roadblock-type 1
k5 m5 o5 q5	4	Dynein Light Chain Roadblock-type 2
k8	1	Dynein Axonemal Heavy Chain 10
k9	1	Dynein Axonemal Heavy Chain 2
l7 n7 p7 r7	4	Dynein Light Chain Tctex-type Protein 2B
l8 n8 p8 r8	4	Dynein Light Chain Tctex-type 1
m0 q0 s0 u0	4	Calaxin
m1 o1 q1 s1	4	Dynein Axonemal Intermediate Chain 1
m2 o2 q2 s2	4	Dynein Axonemal Intermediate Chain 2
m3 o3 q3	3	Dynein Axonemal Light Chain 1
m6 o6 q6 s6 u6	5	Outer Dynein Arm-docking Complex Subunit 1
m7 q7 s7 u7	4	Outer Dynein Arm-docking Complex Subunit 2
m8 o8 q8 s8 u8	5	Outer Dynein Arm-docking Complex Subunit 3
m9 q9 s9 u9	4	Outer Dynein Arm-docking Complex Subunit 4
n0 p0 r0 t0	4	Dynein Axonemal Heavy Chain 5
n9 p9 r9 t9	4	Dynein Axonemal Heavy Chain 9
v1 v2 v3	3	Thioredoxin Domain-containing Protein 6
w	1	Leucine-rich Repeat-containing Protein 34
Chemicals and Non-standard biopolymers (859 molecules)
1	285	GUANOSINE-5'-TRIPHOSPHATE
2	285	MAGNESIUM ION
3	289	GUANOSINE-5'-DIPHOSPHATE

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303