8IJL: Cyo-EM structure of wildtype non-gastric proton pump in the presence of Na+, AlF and ADP

PDB ID: 8IJLDownload
MMDB ID: 236868
PDB Deposition Date: 2023/2/27
Updated in MMDB: 2023/10
Experimental Method:
electron microscopy
Resolution: 2.62  Å
Source Organism:
Similar Structures:
Biological Unit for 8IJL: dimeric; determined by author
Molecular Components in 8IJL
Label Count Molecule
Proteins (2 molecules)
1
Sodium/potassium-transporting Atpase Subunit Alpha
Molecule annotation
1
Sodium/potassium-transporting Atpase Subunit Beta-1
(Gene symbol: Atp1b1)
Molecule annotation
Chemicals and Non-standard biopolymers (17 molecules)
1
1
TETRAFLUOROALUMINATE IONTETRAFLUOROALUMINATE ION
2
1
MAGNESIUM IONMAGNESIUM ION
3
1
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
4
5
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
5
2
CHOLESTEROLCHOLESTEROL
6
2
SODIUM IONSODIUM ION
7
4
2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside
8
1
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303