National Center for
Biotechnology Information

8IHT: Rpd3S bound to the nucleosome

PDB ID:

MMDB ID:

244250

PDB Deposition Date:

2023/2/23

Updated in MMDB:

2025/07

Experimental Method:

electron microscopy

Resolution:

3.72 Å

Source Organism:

Xenopus laevis▼

Taxonomy	Molecule
Xenopus laevis	A, B, C, D, E, F, G, H, I, J
Saccharomyces cerevisiae	M, N, K, L, O, P

Similar Structures:

Biological Unit for 8IHT: hexadecameric; determined by author

Molecular Components in 8IHT
Label	Count	Molecule
Proteins (14 molecules)
A E	2	Histone H3
B F	2	Histone H4
C G	2	Histone H2A
D H	2	Histone H2B
M O	2	Rco1 Isoform 1
N P	2	Chromatin Modification-related Protein Eaf3
K	1	Transcriptional Regulatory Protein Sin3
L	1	Histone Deacetylase Rpd3
Nucleotides(2 molecules)
I	1	DNA (164-mer)
J	1	DNA (165-mer)
Chemicals and Non-standard biopolymers (2 molecules)
1	1	ZINC ION
2	1	CALCIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB