8IB6: Respiratory complex Membrane domain of CI, focus-refined of type IA, Wild type mouse under cold temperature

PDB ID: 8IB6Download
MMDB ID: 252375
PDB Deposition Date: 2023/2/9
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 3.3  Å
Source Organism:
Similar Structures:
Biological Unit for 8IB6: 24-meric; determined by author
Molecular Components in 8IB6
Label Count Molecule
Proteins (24 molecules)
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 2, Mitochondrial
(Gene symbol: Ndufs2)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 6
(Gene symbol: ND6)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 4L
(Gene symbol: ND4L)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 5
(Gene symbol: ND5)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 4
(Gene symbol: ND4)
Molecule annotation
1
Nadh-ubiquinone Oxidoreductase Chain 2
(Gene symbol: ND2)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 10, Mitochondrial
(Gene symbol: Ndufa10)
Molecule annotation
1
Acyl Carrier Protein, Mitochondrial
(Gene symbol: Ndufab1)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 8
(Gene symbol: Ndufa8)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Alpha Subcomplex Subunit 11
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Subunit C1, Mitochondrial
(Gene symbol: Ndufc1)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Subunit C2
(Gene symbol: Ndufc2)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] Iron-sulfur Protein 5
(Gene symbol: Ndufs5)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 1
(Gene symbol: Ndufb1-ps)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 11, Mitochondrial
(Gene symbol: Ndufb11)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 5, Mitochondrial
(Gene symbol: Ndufb5)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 6
(Gene symbol: Ndufb6)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 2, Mitochondrial
(Gene symbol: Ndufb2)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 3
(Gene symbol: Ndufb3)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 8, Mitochondrial
(Gene symbol: Ndufb8)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 4
(Gene symbol: Ndufb4)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 9
(Gene symbol: Ndufb9)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 7
(Gene symbol: Ndufb7)
Molecule annotation
1
Nadh Dehydrogenase [ubiquinone] 1 Beta Subcomplex Subunit 10
(Gene symbol: Ndufb10)
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
12
1,2-Distearoyl-sn-glycerophosphoethanolamine1,2-Distearoyl-sn-glycerophosphoethanolamine
2
4
CARDIOLIPINCARDIOLIPIN
3
1
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
4
1
~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303