8I87: Cryo-EM structure of TIR-APAZ/Ago-gRNA-DNA complex

PDB ID: 8I87Download
MMDB ID: 233101
PDB Deposition Date: 2023/2/3
Updated in MMDB: 2023/09
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
Similar Structures:
Biological Unit for 8I87: hexadecameric; determined by author
Molecular Components in 8I87
Label Count Molecule
Proteins (8 molecules)
4
TIR Domain-containing Protein
Molecule annotation
4
Piwi Domain-containing Protein
Molecule annotation
Nucleotides(8 molecules)
4
DNA (5'-d(p*tp*ap*tp*ap*cp*ap*ap*cp*cp*tp*ap*cp*tp*ap*cp*cp*tp*cp*a)-3')
Molecule annotation
4
RNA (5'-r(p*up*gp*ap*gp*gp*up*ap*gp*up*ap*gp*gp*up*up*gp*up*ap*up*a)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
4
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303