8HZF: A new fluorescent RNA aptamer bound with N565

PDB ID: 8HZFDownload
MMDB ID: 248411
PDB Deposition Date: 2023/1/9
Updated in MMDB: 2024/06
Experimental Method:
x-ray diffraction
Resolution: 2.7  Å
Source Organism:
Biological Unit for 8HZF: dimeric; determined by author and by software (PISA)
Molecular Components in 8HZF
Label Count Molecule
Nucleotides(2 molecules)
2
RNA (36-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
2
GUANOSINE-5'-TRIPHOSPHATEGUANOSINE-5'-TRIPHOSPHATE
2
2
POTASSIUM IONPOTASSIUM ION
3
4
MAGNESIUM IONMAGNESIUM ION
4
2
(5~{Z})-5-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-2-[(~{E})-2-(4-hydroxyphenyl)ethenyl]-3-methyl-imidazol-4-one(5~{Z})-5-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-2-[(~{E})-2-(4-hydroxyphenyl)ethenyl]-3-methyl-imidazol-4-one
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303