8HXY: Cryo-EM structure of the histone deacetylase complex Rpd3S in complex with nucleosome

PDB ID: 8HXYDownload
MMDB ID: 236160
PDB Deposition Date: 2023/1/5
Updated in MMDB: 2023/12
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8HXY: 15-meric; determined by author
Molecular Components in 8HXY
Label Count Molecule
Proteins (13 molecules)
2
Histone H3
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A
Molecule annotation
2
Histone H2B
Molecule annotation
1
Transcriptional Regulatory Protein Sin3
Molecule annotation
1
Histone Deacetylase Rpd3
Molecule annotation
1
Chromatin Modification-related Protein Eaf3
Molecule annotation
2
Transcriptional Regulatory Protein Rco1
Molecule annotation
Nucleotides(2 molecules)
1
DNA (352-mer)
Molecule annotation
1
DNA (352-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
5
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303