8HTU: Cryo-EM structure of PpPSI-L

PDB ID: 8HTUDownload
MMDB ID: 233610
PDB Deposition Date: 2022/12/21
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 2.87  Å
Source Organism:
Similar Structures:
Biological Unit for 8HTU: 26-meric; determined by author
Molecular Components in 8HTU
Label Count Molecule
Proteins (26 molecules)
3
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
2
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
2
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
2
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
2
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A1
(Gene symbol: psaA)
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A2
(Gene symbol: psaB)
Molecule annotation
1
Photosystem I Iron-sulfur Center
(Gene symbol: psaC)
Molecule annotation
1
Photosystem I Reaction Center Subunit II, Chloroplastic
Molecule annotation
1
Photosystem I Reaction Center Subunit IV, Chloroplastic
Molecule annotation
1
Photosystem I Reaction Center Subunit III
Molecule annotation
1
Photosystem I Reaction Center Subunit V, Chloroplastic
Molecule annotation
1
Photosystem I Reaction Center Subunit VI, Chloroplastic
Molecule annotation
1
Photosystem I Reaction Center Subunit Viii
Molecule annotation
1
Photosystem I Reaction Center Subunit IX
(Gene symbol: psaJ)
Molecule annotation
1
Photosystem I Subunit X
Molecule annotation
1
PSI Subunit V
Molecule annotation
1
Photosystem I Reaction Center Subunit XII
Molecule annotation
1
Photosystem I Subunit O
Molecule annotation
1
Chlorophyll A-B Binding Protein, Chloroplastic
Molecule annotation
Chemicals and Non-standard biopolymers (366 molecules)
1
49
CHLOROPHYLL BCHLOROPHYLL B
2
221
CHLOROPHYLL ACHLOROPHYLL A
3
17
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
4
11
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
5
4
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
6
15
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
7
33
BETA-CAROTENEBETA-CAROTENE
8
6
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
9
2
PHYLLOQUINONEPHYLLOQUINONE
10
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
11
4
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
12
1
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303