8HQ8: Bry-LHCII homotrimer of Bryopsis corticulans

PDB ID: 8HQ8Download
MMDB ID: 235180
PDB Deposition Date: 2022/12/13
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.6  Å
Source Organism:
Similar Structures:
Biological Unit for 8HQ8: trimeric; determined by author and by software (PISA)
Molecular Components in 8HQ8
Label Count Molecule
Proteins (3 molecules)
3
Siphonaxanthin Chlorophyll A/B Binding Light-harvesting Complex II, Bry-lhcb1
Molecule annotation
Chemicals and Non-standard biopolymers (69 molecules)
1
5
SiphonaxanthinSiphonaxanthin
2
3
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
3
3
DODECYL-ALPHA-D-MALTOSIDEDODECYL-ALPHA-D-MALTOSIDE
4
24
CHLOROPHYLL BCHLOROPHYLL B
5
18
CHLOROPHYLL ACHLOROPHYLL A
6
5
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
7
3
MAGNESIUM IONMAGNESIUM ION
8
4
SiphoneinSiphonein
9
3
TRIMETHYL GLYCINETRIMETHYL GLYCINE
10
1
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303