8HPO: Cryo-EM structure of a SIN3/HDAC complex from budding yeast

PDB ID: 8HPODownload
MMDB ID: 229847
PDB Deposition Date: 2022/12/12
Updated in MMDB: 2025/08
Experimental Method:
electron microscopy
Resolution: 2.6  Å
Source Organism:
Similar Structures:
Biological Unit for 8HPO: undecameric; determined by author
Molecular Components in 8HPO
Label Count Molecule
Proteins (11 molecules)
1
Transcriptional Regulatory Protein Ume1
(Gene symbol: UME1)
Molecule annotation
1
Transcriptional Regulatory Protein Sds3
(Gene symbol: SDS3)
Molecule annotation
1
Histone Deacetylase Rpd3
(Gene symbol: RPD3)
Molecule annotation
1
Histone Deacetylase Rpd3
(Gene symbol: RPD3)
Molecule annotation
1
Transcriptional Regulatory Protein Sap30
(Gene symbol: SAP30)
Molecule annotation
2
Transcriptional Regulatory Protein Sin3
(Gene symbol: SIN3)
Molecule annotation
1
Transcriptional Regulatory Protein Dep1
(Gene symbol: DEP1)
Molecule annotation
1
Transcriptional Regulatory Protein Pho23
(Gene symbol: PHO23)
Molecule annotation
1
Transcriptional Regulatory Protein Rxt2
(Gene symbol: RXT2)
Molecule annotation
1
Transcriptional Regulatory Protein Rxt3
(Gene symbol: RXT3)
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
2
ZINC IONZINC ION
2
4
POTASSIUM IONPOTASSIUM ION
3
1
Molecule information is not available.
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303