8HPD: Bry-LHCII heterotrimer of Bryopsis corticulans

PDB ID: 8HPDDownload
MMDB ID: 235174
PDB Deposition Date: 2022/12/12
Updated in MMDB: 2023/10
Experimental Method:
electron microscopy
Resolution: 2.74  Å
Source Organism:
Similar Structures:
Biological Unit for 8HPD: trimeric; determined by author
Molecular Components in 8HPD
Label Count Molecule
Proteins (3 molecules)
1
Siphonaxanthin Chlorophyll A/B Binding Light-harvesting Complex II, Bry-lhcb1
Molecule annotation
1
Siphonaxanthin Chlorophyll A/B Binding Light-harvesting Complex II, Bry-lhcb3
Molecule annotation
1
Siphonaxanthin Chlorophyll A/B Binding Light-harvesting Complex II, Bry-lhcb2
Molecule annotation
Chemicals and Non-standard biopolymers (56 molecules)
1
3
SiphoneinSiphonein
2
5
SiphonaxanthinSiphonaxanthin
3
3
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
4
24
CHLOROPHYLL BCHLOROPHYLL B
5
18
CHLOROPHYLL ACHLOROPHYLL A
6
3
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303