8HJV: Cryo-EM structure of carotenoid-depleted RC-LH complex from Roseiflexus castenholzii at 10,000 lux

PDB ID: 8HJVDownload
MMDB ID: 235850
PDB Deposition Date: 2022/11/23
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
Similar Structures:
Biological Unit for 8HJV: 35-meric; determined by author
Molecular Components in 8HJV
Label Count Molecule
Proteins (35 molecules)
15
Beta Subunit of Light-harvesting 1
Molecule annotation
15
Alpha Subunit of Light-harvesting 1
Molecule annotation
1
Reaction Center Protein L Chain
Molecule annotation
1
Reaction Center Protein M Chain
Molecule annotation
1
Subunit Y
Molecule annotation
1
Multiheme_cytc Domain-containing Protein
Molecule annotation
1
Subunit Z
Molecule annotation
Chemicals and Non-standard biopolymers (67 molecules)
1
48
BACTERIOCHLOROPHYLL ABACTERIOCHLOROPHYLL A
2
5
beta,psi-caroten-4-onebeta,psi-caroten-4-one
3
3
BACTERIOPHEOPHYTIN ABACTERIOPHEOPHYTIN A
4
3
2-methyl-3-[(2E,6E,10E,14E,18E,22E,26E,30E,34E,38E)-3,7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,1 4,18,22,26,30,34,38,42-undecaen-1-yl]naphthalene-1,4-dione2-methyl-3-[(2E,6E,10E,14E,18E,22E,26E,30E,34E,38E)-3,7,11,15,19,23,27,31,35,39,43-undecamethyltetratetraconta-2,6,10,1 4,18,22,26,30,34,38,42-undecaen-1-yl]naphthalene-1,4-dione
5
1
FE (III) IONFE (III) ION
6
3
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
7
4
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303