8HIM: A cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 Angstrom

PDB ID: 8HIMDownload
MMDB ID: 228178
PDB Deposition Date: 2022/11/21
Updated in MMDB: 2024/07
Experimental Method:
electron microscopy
Resolution: 2.8  Å
Source Organism:
Similar Structures:
Biological Unit for 8HIM: tridecameric; determined by author
Molecular Components in 8HIM
Label Count Molecule
Proteins (10 molecules)
1
DNA-directed RNA Polymerase V Largest Subunit
Molecule annotation
1
Rpold Domain-containing Protein
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
Molecule annotation
1
RNA_pol_l_2 Domain-containing Protein
Molecule annotation
1
DNA-directed RNA Polymerases II, IV and V Subunit 12
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
Molecule annotation
1
DNA-directed RNA Polymerase Subunit
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
Molecule annotation
1
DNA-directed RNA Polymerase IV and V Subunit 2
Molecule annotation
Nucleotides(3 molecules)
1
DNA (34-mer)
Molecule annotation
1
DNA (34-mer)
Molecule annotation
1
RNA (5'-r(*up*ap*up*ap*up*gp*cp*ap*up*ap*ap*ap*gp*ap*cp*cp*ap*gp*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
6
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303