8H3E: Complex structure of a small molecule (SPC-14) bound SARS-CoV-2 spike protein, closed state

PDB ID: 8H3EDownload
MMDB ID: 228166
PDB Deposition Date: 2022/10/8
Updated in MMDB: 2026/04
Experimental Method:
electron microscopy
Resolution: 3.06  Å
Source Organism:
Similar Structures:
Biological Unit for 8H3E: trimeric; determined by author
Molecular Components in 8H3E
Label Count Molecule
Proteins (3 molecules)
3
Spike Glycoprotein,fibritin
(Gene symbol: wac)
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
3
7-(6-nitro-2,3-dihydroindol-1-yl)-7-oxidanyidene-heptanoic acid7-(6-nitro-2,3-dihydroindol-1-yl)-7-oxidanyidene-heptanoic acid
2
15
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303