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8GRM:
Cryo-EM structure of PRC1 bound to H2AK119-UbcH5b-Ub nucleosome
PDB ID:
8GRM
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MMDB ID:
229011
PDB Deposition Date:
2022/9/2
Updated in MMDB:
2024/07
Experimental Method:
electron microscopy
Resolution:
3.05 Å
Source Organism:
Homo sapiens
Similar Structures:
VAST+
Download sequence data
Biological Unit for 8GRM: 14-meric; determined by author
Molecular Components in 8GRM
Label
Count
Molecule
Proteins (12 molecules)
A
E
2
Histone H3
B
F
2
Histone H4
C
G
2
Histone H2A Type 1-b/e
(Gene symbol:
H2AC4
)
D
1
Histone H2B Type 1-K
(Gene symbol:
H2BC12
)
H
1
Histone H2B Type 1-K
(Gene symbol:
H2BC12
)
M
1
Commd3 Protein
(Gene symbol:
COMMD3
)
N
1
Ring1b
O
1
Ubiquitin
(Gene symbol:
UBB
)
P
1
Ubch5b
Nucleotides(2 molecules)
I
1
DNA (144-mer)
J
1
DNA (145-mer)
Chemicals and Non-standard biopolymers (4 molecules)
1
4
ZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303