8GLH: Crystal Structure of Human CD1b in Complex with Endogenous PC C40:5

PDB ID: 8GLHDownload
MMDB ID: 235813
PDB Deposition Date: 2023/3/22
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 1.83  Å
Source Organism:
Similar Structures:
Biological Unit for 8GLH: dimeric; determined by author and by software (PISA)
Molecular Components in 8GLH
Label Count Molecule
Proteins (2 molecules)
1
T-cell Surface Glycoprotein Cd1b
(Gene symbol: CD1B)
Molecule annotation
1
Beta-2-microglobulin
(Gene symbol: B2M)
Molecule annotation
Chemicals and Non-standard biopolymers (22 molecules)
1
4
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
2
beta-D-mannopyranosebeta-D-mannopyranose
3
2
alpha-D-mannopyranosealpha-D-mannopyranose
4
4
alpha-L-fucopyranosealpha-L-fucopyranose
5
3
IODIDE IONIODIDE ION
6
1
(11E)-hexadec-11-enoic acid(11E)-hexadec-11-enoic acid
7
1
[(2~{R})-1-dodecanoyloxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propan-2-yl] (8~{Z},11~{Z},14~{Z},24~{Z},27~{Z})-triaconta-8,11,14,24,27-pentaenoate[(2~{R})-1-dodecanoyloxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propan-2-yl] (8~{Z},11~{Z},14~{Z},24~{Z},27~{Z})-triaconta-8,11,14,24,27-pentaenoate
8
4
1,2-ETHANEDIOL1,2-ETHANEDIOL
9
1
SODIUM IONSODIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303