8GLF: Crystal Structure of Human CD1b in Complex with Sphingomyelin C34:2

PDB ID: 8GLFDownload
MMDB ID: 235811
PDB Deposition Date: 2023/3/22
Updated in MMDB: 2023/09
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
Similar Structures:
Biological Unit for 8GLF: dimeric; determined by author and by software (PISA)
Molecular Components in 8GLF
Label Count Molecule
Proteins (2 molecules)
1
T-cell Surface Glycoprotein Cd1b
(Gene symbol: CD1B)
Molecule annotation
1
Beta-2-microglobulin
(Gene symbol: B2M)
Molecule annotation
Chemicals and Non-standard biopolymers (20 molecules)
1
4
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
2
alpha-D-mannopyranosealpha-D-mannopyranose
4
2
alpha-L-fucopyranosealpha-L-fucopyranose
5
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
6
1
[(~{Z},2~{R},3~{S})-2-(hexadecanoylamino)-3-oxidanyl-octadec-4-enyl] 2-(trimethyl-$l^{4}-azanyl)ethyl hydrogen phosphate[(~{Z},2~{R},3~{S})-2-(hexadecanoylamino)-3-oxidanyl-octadec-4-enyl] 2-(trimethyl-$l^{4}-azanyl)ethyl hydrogen phosphate
7
1
TETRACOSYL PALMITATETETRACOSYL PALMITATE
8
4
CHLORIDE IONCHLORIDE ION
9
2
IODIDE IONIODIDE ION
10
1
NICKEL (II) IONNICKEL (II) ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303