8GH6: Bombyx mori R2 retrotransposon initiating target-primed reverse transcription

PDB ID: 8GH6Download
MMDB ID: 228775
PDB Deposition Date: 2023/3/9
Updated in MMDB: 2023/08
Experimental Method:
electron microscopy
Resolution: 3.08  Å
Source Organism:
Similar Structures:
Biological Unit for 8GH6: pentameric; determined by author
Molecular Components in 8GH6
Label Count Molecule
Protein (1 molecule)
1
Reverse Transcriptase-like Protein
Molecule annotation
Nucleotides(4 molecules)
1
28S DNA Bottom Strand, 3' Side
Molecule annotation
1
28S DNA Bottom Strand, 5' Side (Priming Strand)
Molecule annotation
1
R2bm 3'utr RNA
Molecule annotation
1
28S DNA TOP Strand
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
ZINC IONZINC ION
2
1
MAGNESIUM IONMAGNESIUM ION
3
1
THYMIDINE-5'-TRIPHOSPHATETHYMIDINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303