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8GB5:
Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody 25F9
PDB ID:
8GB5
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MMDB ID:
230586
PDB Deposition Date:
2023/2/24
Updated in MMDB:
2024/12
Experimental Method:
x-ray diffraction
Resolution:
3.35 Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2
▼
Taxonomy
Molecule
Severe acute respiratory syndrome coronavirus 2
A, D, G, J
Macaca mulatta
B, C, E, F, H, I, K, L
Similar Structures:
VAST+
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Biological Unit for 8GB5: trimeric; determined by author and by software (PISA)
Molecular Components in 8GB5
Label
Count
Molecule
Proteins (3 molecules)
A
1
Spike Protein S1
B
1
25f9 Heavy Chain
C
1
25f9 Light Chain
Chemicals and Non-standard biopolymers (3 molecules)
1
1
2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
SULFATE ION
3
1
BICINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303