8FD1: Crystal structure of photoactivated rhodopsin in complex with a nanobody

PDB ID: 8FD1Download
MMDB ID: 234756
PDB Deposition Date: 2022/12/1
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 4.25  Å
Source Organism:
Bos taurus▼
Similar Structures:
Biological Unit for 8FD1: tetrameric; determined by author
Molecular Components in 8FD1
Label Count Molecule
Proteins (4 molecules)
2
Rhodopsin
Molecule annotation
2
Nanobody NB2
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
9
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
beta-D-mannopyranosebeta-D-mannopyranose
3
4
alpha-D-mannopyranosealpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303