8F86: SIRT6 bound to an H3K9Ac nucleosome

PDB ID: 8F86Download
MMDB ID: 228740
PDB Deposition Date: 2022/11/21
Updated in MMDB: 2023/04
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8F86: undecameric; determined by author
Molecular Components in 8F86
Label Count Molecule
Proteins (9 molecules)
2
Histone H3.2
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A Type 1
Molecule annotation
2
Histone H2B
Molecule annotation
1
Nad-dependent Protein Deacylase Sirtuin-6
Molecule annotation
Nucleotides(2 molecules)
1
DNA (148-mer)
Molecule annotation
1
DNA (148-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(3aR,5R,6R,6aR)-6-hydroxytetrahydro-2H-furo[2,3-d][1,3]oxathiol-5-yl]methyl dihydrogen diphosphate (non-preferred name)[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(3aR,5R,6R,6aR)-6-hydroxytetrahydro-2H-furo[2,3-d][1,3]oxathiol-5-yl]methyl dihydrogen diphosphate (non-preferred name)
2
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303