8EC0: III2IV respiratory supercomplex from Saccharomyces cerevisiae cardiolipin-lacking mutant

PDB ID: 8EC0Download
MMDB ID: 230539
PDB Deposition Date: 2022/8/31
Updated in MMDB: 2023/05
Experimental Method:
electron microscopy
Resolution: 3.3  Å
Source Organism:
Similar Structures:
Biological Unit for 8EC0: 30-meric; determined by author
Molecular Components in 8EC0
Label Count Molecule
Proteins (30 molecules)
2
Cytochrome B-c1 Complex Subunit 1, Mitochondrial
(Gene symbol: COR1)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 2, Mitochondrial
(Gene symbol: QCR2)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit Rieske, Mitochondrial
(Gene symbol: RIP1)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 9, Mitochondrial
(Gene symbol: QCR9)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 7, Mitochondrial
(Gene symbol: QCR7)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 6, Mitochondrial
(Gene symbol: QCR6)
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 8, Mitochondrial
(Gene symbol: QCR8)
Molecule annotation
2
Cytochrome B
(Gene symbol: COB)
Molecule annotation
1
Cytochrome C Oxidase Subunit 1
(Gene symbol: COX1)
Molecule annotation
2
Cytochrome C1, Heme Protein, Mitochondrial
(Gene symbol: CYT1)
Molecule annotation
1
Cytochrome C Oxidase Subunit 8, Mitochondrial
(Gene symbol: COX8)
Molecule annotation
1
Cytochrome C Oxidase Subunit 7, Mitochondrial
(Gene symbol: COX7)
Molecule annotation
1
Cytochrome C Oxidase Subunit 3
(Gene symbol: COX3)
Molecule annotation
1
Cytochrome C Oxidase Subunit 2
(Gene symbol: COX2)
Molecule annotation
1
Cytochrome C Oxidase Subunit 6, Mitochondrial
(Gene symbol: COX6)
Molecule annotation
1
Cytochrome C Oxidase Subunit 9, Mitochondrial
(Gene symbol: COX9)
Molecule annotation
1
Cytochrome C Oxidase Subunit 13, Mitochondrial
(Gene symbol: COX13)
Molecule annotation
1
Cytochrome C Oxidase Subunit 4, Mitochondrial
(Gene symbol: COX4)
Molecule annotation
1
Cytochrome C Oxidase Subunit 12, Mitochondrial
(Gene symbol: COX12)
Molecule annotation
1
Cytochrome C Oxidase Subunit 26, Mitochondrial
(Gene symbol: COX26)
Molecule annotation
1
Cytochrome C Oxidase Subunit 5A, Mitochondrial
(Gene symbol: COX5A)
Molecule annotation
Chemicals and Non-standard biopolymers (41 molecules)
1
15
DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINEDI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
2
7
(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE
3
2
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
4
4
1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE
5
6
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
6
2
5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL
7
1
COPPER (II) IONCOPPER (II) ION
8
2
HEME-AHEME-A
9
2
DINUCLEAR COPPER IONDINUCLEAR COPPER ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303