8E7P: Staphylococcus aureus ClpP in complex with compound 3421

PDB ID: 8E7PDownload
MMDB ID: 232419
PDB Deposition Date: 2022/8/24
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.68  Å
Source Organism:
Similar Structures:
Biological Unit for 8E7P: 14-meric; determined by author and by software (PISA)
Molecular Components in 8E7P
Label Count Molecule
Proteins (14 molecules)
14
Atp-dependent CLP Protease Proteolytic Subunit
(Gene symbol: clpP)
Molecule annotation
Chemicals and Non-standard biopolymers (28 molecules)
1
15
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
2
13
(5R,6S,9aS)-N-benzyl-6-[(4-hydroxyphenyl)methyl]-8-[(naphthalen-1-yl)methyl]-4,7-dioxohexahydro-2H-pyrazino[1,2-a]pyrimidine-1(6H)-carboxamide(5R,6S,9aS)-N-benzyl-6-[(4-hydroxyphenyl)methyl]-8-[(naphthalen-1-yl)methyl]-4,7-dioxohexahydro-2H-pyrazino[1,2-a]pyrimidine-1(6H)-carboxamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303