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8E4D:
[U:Ag+:U] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice
PDB ID:
8E4D
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MMDB ID:
228716
PDB Deposition Date:
2022/8/18
Updated in MMDB:
2023/10
Experimental Method:
x-ray diffraction
Resolution:
4.19 Å
Source Organism:
synthetic construct
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Biological Unit for 8E4D: dodecameric; determined by author
Molecular Components in 8E4D
Label
Count
Molecule
Nucleotides(12 molecules)
A
A_1
A_2
3
DNA (5'-d(*gp*ap*gp*cp*ap*gp*cp*cp*tp*gp*tp*up*tp*gp*gp*ap*cp*ap*tp*cp*a)-3')
B
B_1
B_2
3
DNA (5'-d(p*cp*cp*a)-3')
C
C_1
C_2
3
DNA (5'-d(p*gp*gp*cp*tp*gp*cp*t)-3')
D
D_1
D_2
3
DNA (5'-d(p*cp*tp*gp*ap*tp*gp*t)-3')
Chemicals and Non-standard biopolymers (3 molecules)
1
3
SILVER ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303