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8E1P:
Crystal structure of BG505 SOSIP.v4.1-GT1.2 trimer in complex with gl-PGV20 and PGT124 Fabs
PDB ID:
8E1P
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MMDB ID:
231879
PDB Deposition Date:
2022/8/11
Updated in MMDB:
2023/10
Experimental Method:
x-ray diffraction
Resolution:
3.82 Å
Source Organism:
Human immunodeficiency virus 1
▼
Taxonomy
Molecule
Human immunodeficiency virus 1
E, G, M, Y, X, Z
Homo sapiens
F, H, I, L, N, O, A, C, J, B, D, K
Similar Structures:
VAST+
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Biological Unit for 8E1P: octadecameric; determined by author
Molecular Components in 8E1P
Label
Count
Molecule
Proteins (18 molecules)
F
H
N
3
Germline Pgv20 Heavy Chain
I
1
Germline Pgv20 Light Chain
L
O
2
Germline Pgv20 Light Chain
A
C
J
3
Pgt124 FAB Light Chain
E
G
M
3
Bg505-sosip.v4.1-gt1.2gp120
B
D
K
3
Pgt124 FAB Heavy Chain
Y
X
Z
3
Envelope Glycoprotein Gp41
Chemicals and Non-standard biopolymers (85 molecules)
1
63
2-acetamido-2-deoxy-beta-D-glucopyranose
2
6
beta-D-mannopyranose
3
16
alpha-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303