8DXY: [T:Au+:T--(pH11-pH7; 180s)] Metal-mediated DNA base pair in tensegrity triangle grown at pH 11 and soaked in pH 7 for 180s

PDB ID: 8DXYDownload
MMDB ID: 233822
PDB Deposition Date: 2022/8/3
Updated in MMDB: 2023/08
Experimental Method:
x-ray diffraction
Resolution: 4.87  Å
Source Organism:
Biological Unit for 8DXY: dodecameric; determined by author
Molecular Components in 8DXY
Label Count Molecule
Nucleotides(12 molecules)
3
DNA (5'-d(*gp*ap*gp*cp*ap*gp*cp*cp*tp*gp*tp*tp*tp*gp*gp*ap*cp*ap*tp*cp*a)-3')
Molecule annotation
3
DNA (5'-d(p*cp*cp*ap*tp*ap*cp*a)-3')
Molecule annotation
3
DNA (5'-d(p*gp*gp*cp*tp*gp*cp*t)-3')
Molecule annotation
3
DNA (5'-d(p*cp*tp*gp*ap*tp*gp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
6
GOLD IONGOLD ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303