8DWF: Glycosylase MutY variant E43S in complex with DNA containing d(8-oxo-G) paired with substrate adenine

PDB ID: 8DWFDownload
MMDB ID: 233808
PDB Deposition Date: 2022/8/1
Updated in MMDB: 2023/08
Experimental Method:
x-ray diffraction
Resolution: 2.6  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8DWF: trimeric; determined by author and by software (PISA)
Molecular Components in 8DWF
Label Count Molecule
Protein (1 molecule)
1
Adenine DNA Glycosylase
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*ap*ap*gp*ap*cp*(8og)p*tp*gp*gp*ap*c)-3')
Molecule annotation
1
DNA (5'-d(*tp*gp*tp*cp*cp*ap*ap*gp*tp*cp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
1
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
2
2
CALCIUM IONCALCIUM ION
3
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303