8DVF: T4 Bacteriophage primosome with single strand DNA, state 1

PDB ID: 8DVFDownload
MMDB ID: 231676
PDB Deposition Date: 2022/7/28
Updated in MMDB: 2023/08
Experimental Method:
electron microscopy
Resolution: 3.3  Å
Source Organism:
Similar Structures:
Biological Unit for 8DVF: nonameric; determined by author
Molecular Components in 8DVF
Label Count Molecule
Proteins (7 molecules)
6
Dnab-like Replicative Helicase
Molecule annotation
1
DNA Primase
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(p*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*tp*t)-3')
Molecule annotation
1
DNA (5'-d(p*gp*gp*cp*tp*g)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (10 molecules)
1
5
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTERPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2
5
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303