8DV3: Crystal structure of human CD1b presenting Phosphatidylinositol C34:1

PDB ID: 8DV3Download
MMDB ID: 228973
PDB Deposition Date: 2022/7/28
Updated in MMDB: 2025/12
Experimental Method:
x-ray diffraction
Resolution: 1.9  Å
Source Organism:
Similar Structures:
Biological Unit for 8DV3: dimeric; determined by author and by software (PISA)
Molecular Components in 8DV3
Label Count Molecule
Proteins (2 molecules)
1
T-cell Surface Glycoprotein Cd1b
(Gene symbol: CD1B)
Molecule annotation
1
Beta-2-microglobulin
(Gene symbol: B2M)
Molecule annotation
Chemicals and Non-standard biopolymers (28 molecules)
1
4
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
2
alpha-D-mannopyranosealpha-D-mannopyranose
4
3
alpha-L-fucopyranosealpha-L-fucopyranose
5
6
1,2-ETHANEDIOL1,2-ETHANEDIOL
6
6
CHLORIDE IONCHLORIDE ION
7
2
SODIUM IONSODIUM ION
8
1
TETRACOSYL PALMITATETETRACOSYL PALMITATE
9
2
IODIDE IONIODIDE ION
10
1
1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoinositol1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoinositol
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303